About
Developers
Bjoern O. Forsberg
Pranav Shah
Alister Burt
Primary citation
If you find OccuPy useful for any purpose, plaese refer to it and formally cite the paper:
@article{Forbserg2022,
author = {Forbserg, Bjoern O and Shah, Pranav NM and Burt, Alister},
doi = {TBA},
journal = {bioRxiv},
pages = {1--24},
title = {{OccuPy: Estimation of relative contrast in cryo-EM reconstructions}},
year = {2022}
}
Acknowledgements
OccuPy is deployed to PyPi using github and github workflows.
The sigmoid function originates from Prof. Werner Antweiler.
The documentation format is readthedocs, using MkDocs-material, based on a configuration by Talley Lambert.
OccuPy is built purely in python. At it's core, it uses numpy, scipy and matplotlib.
Additional features utilize scikit-image.
I/O is handled by mrcfile, and the command-line interface uses typer.
The GUI was built in PyQt5, using Qt5 designer.